Sysmic

2020

Björkesten J, Patil S, Fredolini C, Lönn P, Landegren U. A multiplex platform for digital measurement of circular DNA reaction products. Submitted to Nucl Acids Res (2020).

Masuzzo, P., Gonzalez-Beltran, A., Ampe, C., Besson, S., Eibl, R., Friedl, P., Gunzer, M., Kittisopikul, M., Le Dévédec, S., Leo, S., Moore, J., Prilusky, J., Rocca-Serra, P., Roudot, P., Sansone, S-A., Sergeant G., Strömblad, S., Swedlow, J.R., Van Troys, M., Zaritsky, A., Martens, L. Community Standards for Open Cell Migration Data. Under revision, GigaScience (2020).

Pielawski N and Wählby C. Introducing Hann windows for reducing edge-effects in patch-based image segmentation. https://arxiv.org/abs/1910.07831. Accepted for publication in PlosONE (2020).

Gupta A, Larsson V, Matuszewski D, Strömblad S, Wählby C. Weakly-Supervised Prediction of Cell Migration Modes in Confocal Microscopy Images Using Bayesian Deep Learning. bioRxiv. 2019 Jan 1:810473. DOI: https://doi.org/10.1101/810473, accepted for publication in The proceedings of IEEE ISBI 2020.

Pielawski N, Hu J, Strömblad S, Wählby C. In Silico Prediction of Cell Traction Forces. arXiv preprint arXiv:1910.07380. 2019. DOI: arXiv:1910.07380, accepted for publication in The proceedings of IEEE ISBI 2020.

Yoosuf N, Navarro JF, Salmén F, Ståhl PL, Daub CO. Identification and transfer of spatial transcriptomics signatures for cancer diagnosis. Breast Cancer Res 22,16 (2020).

2019

Herr A, Kitamori T, Landegren U, Kamali-Moghaddam M. Next wave advances in single cell analyses. Editorial in Analyst DOI: 10.1039/c9an90011j (2019).

Gallant CJ, Landegren U., A compendium on single-cell analysis for the curious., FEBS J. 286,1442-1444 (2019).

Herr AE, Kitamori T, Landegren U, Kamali-Moghaddam M., Next wave advances in single-cell analyses, Analyst. 144, 735-737 (2019).

Wu D, Yan J, Sun Y, Thulin M, Qian X, Shen Q, Wik L, Oelrich J, Dubois KL, Ronquist KG, Nilsson M, Landegren U, Kamali-Moghaddam M. Profiling surface proteins of single exosomes by proximity-dependent barcoding. Nat Comm 10, 3854 (2019).

Lock, JG., Baschieri, F., Jones, MC., Humphries, JD., Montagnac, G., Strömblad, S. & Martin J Humphries, MJ. Clathrin-containing adhesion complexes. J Cell Biol 218, 2086-2095 (2019).

Gupta, A., Harrison, P.J., Wieslander, H., Pielawski, N., Kartasalo, K., Partel, G., Solorzano, L., Suveer, A., Klemm, A.H., Spjuth, O. and Sintorn, I.M., and Wählby, C. Deep Learning in Image Cytometry: A Review. Cytometry A 95(4), 366-380 (2019).

2018

Strömblad S. & Lock J.G. Using Systems Microscopy to Understand the Emergence of Cell Migration from Cell Organization. Meth Mol Biol, vol 1749. (2018).

Landegren U, Al-Amin RA, Björkesten J., A myopic perspective on the future of protein diagnostics., N Biotechnol.45, 14-18 (2018).

Zieba A, Ponten F, Uhlén M, Landegren U., In situ protein detection with enhanced specificity using DNA-conjugated antibodies and proximity ligation. Mod Pathol. 31, 253 (2018).

Lindblom RPF, Shen Q, Axén S, Landegren U, Kamali-Moghaddam M, Thelin S. Neurologic outcomes and biomarkers after surgery on the thoracic aorta. J Cardiovasc Transl Res 11, 503 (2018).

Franzén B, Kamali-Moghaddam M, Alexeyenko A, Hatschek T, Becker S, Wik L, Kierkegaard J, Eriksson A, Muppani NR, Ullerås E, Auer G, Landegren U, Lewensohn R. A fine needle aspiration-based protein signature discriminates benign from malignant breast lesions. Mol Oncol 12, 1415 (2018).

Klaesson A, Grannas K, Ebai T, Heldin J, Koos B, Raykova D, Oelrich J, Arngården L, Söderberg O, Landegren U. Improved efficiency of in situ protein analysis by proximity ligation using UnFold probes. Sci Rep 8, 5400 (2018).

Shen Q, Björkesten J, Galli J, Ekman D, Broberg J, Nordberg N, Tillander A, Kamali-Moghaddam M, Tybring G, Landegren U. Strong impact of pre-centrifugation delay but not of repeated freeze-thaw cycles on plasma protein profiles. Clin Chem Lab Med 28, 582 (2018).

Lock, J.G., Jones, M.C., Askari, J.A., Gong, X., Oddone, A., Olofsson, H., Göransson, S.A., Lakadamyali, M., Humphries, M.J., & Strömblad, S. Reticular adhesions are a distinct class of adhesion complex that mediates cell matrix attachment during mitosis. Nat Cell Biol 20, 1290-1302 (2018).

Gong, X., Didan, Y., Lock, JG. & Strömblad, S. KIF13A-regulated RhoB plasma
membrane localization governs membrane blebbing and blebby amoeboid cell migration. EMBO J. 37, e98994 (2018).

Spiess M., Hernandez-Varas, P., Oddone A., Blom, H., Olofsson, H, Waithe, D., Lock, J.G., Lakadamyali, M., Strömblad, S. Active and inactive β1 integrins segregate into distinct nanoclusters in focal adhesions. J Cell Biol 217, 1929-1940 (2018).